Luis Rocha's profile
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What I do
Luis M. Rocha is an Associate Professor and Director of Graduate Programs of the Department of Informatics, as well as a member of its Complex Systems Group. He is also core faculty of the Cognitive Science Program, Adjunct Associate Professor in Computer Science, and affiliated with the Biocomplexity Institute at Indiana University, Bloomington, USA. He is also the director of the Computational Biology Collaboratorium and in the Direction of PhD program in Computational Biology at the Instituto Gulbenkian da Ciencia, Portugal.
Affiliations
Current affiliations
Location
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Interests
Computational Biology: Bioinformatics, Text and Literature Mining, Automatic Functional Annotation, Microarray Data Analysis, RNA Editing, Network Models, Systems Biology, Evolutionary Systems.
Complex Systems Modeling: Network Analysis (Biological, Social and Knowledge Networks), Agent-based Modeling, Collective Knowledge Organization, Dynamical Systems.
Distributed Artificial Intelligence and Artificial Life: Adaptive and Evolutionary Computation, Co-evolution, Cellular Automata, Emergent Computation, Embodied Cognition, Cognitive Categorization, Origin of Representations and Symbols.
Search Informatics: Intelligent Information Retrieval, Recommendation Systems, Knowledge Management, Data-Mining, Knowledge Discovery, Internet Development.
Projects
http://informatics.indiana.edu/rocha/cprojects.html
Publications
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Huang C, Kaur J, Maguitman A, Rocha L. Agent-based model of genotype editing. Evolutionary computation (3) , 253-89 (2007) PubMed ID:(17705779)
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Maguitman A, Rechtsteiner A, Verspoor K, Strauss C, Rocha L. Large-scale testing of bibliome informatics using Pfam protein families. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing , 76-87 (2006) PubMed ID:(17094229)
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Verspoor K, Cohn J, Joslyn C, Mniszewski S, Rechtsteiner A, Rocha L, Simas T. Protein annotation as term categorization in the gene ontology using word proximity networks. BMC bioinformatics , S20 (2005) (Epub 24 May 2005) PubMed ID:(15960833)
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Challacombe J, Rechtsteiner A, Gottardo R, Rocha L, Browne E, Shenk T, Altherr M, Brettin T. Evaluation of the host transcriptional response to human cytomegalovirus infection. Physiological genomics (1) , 51-62 (2004) (Epub 17 Jun 2004) PubMed ID:(15069167)
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