Hakenberg J, Bickel S, Plake C, Brefeld U, Zahn H, Faulstich L, Leser U, Scheffer T. Systematic feature evaluation for gene name recognition. BMC bioinformatics 6 Suppl 1 , S9 (Epub 24 May 2005) PubMed ID:(15960843)

Hakenberg J, Nussbaum A, Schild H, Rammensee H, Kuttler C, Holzhütter H, Kloetzel P, Kaufmann S, Mollenkopf H. MAPPP: MHC class I antigenic peptide processing prediction. Applied bioinformatics 2 (3) , 155-8 PubMed ID:(15130801)

Hakenberg J, Schmeier S, Kowald A, Klipp E, Leser U. Finding kinetic parameters using text mining. Omics : a journal of integrative biology 8 (2) , 131-52 PubMed ID:(15268772)

Leser U, Hakenberg J. What makes a gene name? Named entity recognition in the biomedical literature. Briefings in bioinformatics 6 (4) , 357-69 PubMed ID:(16420734)

Plake C, Schiemann T, Pankalla M, Hakenberg J, Leser U. AliBaba: PubMed as a graph. Bioinformatics (Oxford, England) 22 (19) , 2444-5 (Epub 26 Jul 2006) PubMed ID:(16870931)