Publications

• Shinoda K, Sugimoto M, Tomita M, Ishihama Y. Informatics for peptide retention properties in proteomic LC-MS Proteomics 8 (4) , 787 - 798 (2008) doi: 10.1002/pmic.200700692

• Sugiyama N, Masuda T, Shinoda K, Nakamura A, Tomita M, Ishihama Y. Phosphopeptide Enrichment by Aliphatic Hydroxy Acid-modified Metal Oxide Chromatography for Nano-LC-MS/MS in Proteomics Applications Molecular & Cellular Proteomics 6 (6) , 1103 - 1109 (2007) (Epub 05 Mar 2007) doi: 10.1074/mcp.T600060-MCP200

• Arakawa K, Yamada Y, Shinoda K, Nakayama Y, Tomita M. GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes. BMC bioinformatics 7 , 168 (2006) (Epub 23 Mar 2006) PubMed ID:(16553966)

• Shinoda K, Sugimoto M, Yachie N, Sugiyama N, Masuda T, Robert M, Soga T, Tomita M. Prediction of liquid chromatographic retention times of peptides generated by protease digestion of the Escherichia coli proteome using artificial neural networks. Journal of proteome research 5 (12) , 3312-7 (2006) PubMed ID:(17137332)

• Shinoda K, Yachie N, Masuda T, Sugiyama N, Sugimoto M, Soga T, Tomita M. HybGFS: a hybrid method for genome-fingerprint scanning. BMC bioinformatics 7 , 479 (2006) (Epub 29 Oct 2006) PubMed ID:(17069662)

Contact

email:

kshinoda [ at ] humanmetabolome.com