Alan Ruttenberg: all publications

• Publications

  • Ruttenberg A, Clark T, Bug W, Samwald M, Bodenreider O, Chen H, Doherty D, Forsberg K, Gao Y, Kashyap V, Kinoshita J, Luciano J, Scott Marshall M, Ogbuji C, Rees J, Stephens S, Wong GT, Elizabeth Wu, Zaccagnini D, Hongsermeier T, Neumann E, Herman I, Cheu. Advancing translational research with the Semantic Web BMC Bioinformatics 8 (2007)

  • Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ, The OBI Consortium, Leontis N, Rocca-Serra P, Ruttenberg A, Sansone S, Scheuermann RH, Shah N, Whetzel PL & Lewis S. The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration Nature Biotechnology 25 , 1251 - 1255 (2007)

  • Connectedness Profiles in Protein Networks for the Analysis of Gene Research in Computational Molecular Biology: 10th Annual International Conference, RECOMB (2006)

  • Edge-count probabilities for the identification of local protein communities and their organization Proteins (2006) PubMed ID:(16372355)

  • What BioPAX communicates and how to extend OWL to help it OWLED-2006 (2006)

  • Detection of activity centers in cellular pathways using transcript profiling Journal of biopharmaceutical statistics (2004) doi: 10.1081/BIP-200025678 PubMed ID:(15468760)

  • Computational knowledge integration in biopharmaceutical research Briefings in Bioinformatics (2003) PubMed ID:(14582520)

  • Experience Using OWL DL for the Exchange of Biological Pathway Information OWLED-2005