• A Meandering Scholar by Ian Brooks

    Wherein I hope to document the path of change: The continuing evolution of the Postdoctoral Fellow within academia.

    • Quit while you're ahead

      Friday, 06 Nov 2009

      I spent a day working on a nice piece of toggle code in JavaScript. Admittedly I inherited it.

      Well, finally trouble shooting is through and at BANG ON 5PM, I got the little bastard to work. Click a link and a nested URL drops down, as if by magic.

      Now, all I have to do is figure out how to make a series of nested links drop out of one toggle.

      But.

      Did I quit while I was ahead, basking in the warm glow that comes from making my computer obey me (for a change) by nothing more than the application of logic and nice code?

      No. Sadly. I didn’t.

      Bolstered by enthusiasm, I spent an hour slaving away at my computer, said farewell to my office mates as they went off to the pub. Sweating in the steamy heat of my office. An hour of tweaking, and snipping, cutting and pasting. A headache inducing hour of getting more and more frustrated as I code and code, and every time I upload the damn file to the bloody server NOTHING IS CHANGING. THE SODDING THING IS JUST SITTING THERE DISPLAYING ONE SODDING LINK.

      I then realized I had been repeatedly overwriting my local copy of the file, and not actually uploading it to the server.

      An Hour.

      I can’t remember the original code now either.

      Excuse me, dear Reader. I am going to go and VERY drunk.

    • More or less coffee today?

      Wednesday, 04 Nov 2009

      Sometimes it makes me feel like this

      I have a lot of things I need to do, and some of them I really want to do because they are either:

      A Important (Postdoc Association website)
      B Interesting (…actually drawing a blanck on this one…)
      C Monotonous (convert 44 page list of URLs into expandable table in HTML)

      I want C right now. My head is going to burst if I don’t get some down time/numb time. It would be great just to turn on the iPod and play with code for a couple of hours…

      But I’m getting more and more chores dumped on me (which is OK… but….), And my office AC won’t cool the space. I have broken entropy apparently. the laws of thermodynamics don’t work in Room 411.

      So, I’m getting hot and bothered and starting to get fretful, and need to cool off but have chores to do and maybe that last pot of coffee just a little bit too strong.

    • PC vs. Mac. A keyboard question.

      Thursday, 22 Oct 2009

      Why oh why oh why oh why do little things like keyboard shortcuts have to differ between Mac & PC?

      Like “jump back one word” vs “jump back one page”?

      I only ask, because, say, for example, you’re taking an online test, and the system is set for a single attempt. Well, when you hit the wrong combination and it jumps back a whole page, the system locks you out as if you’d submitted the test.

      Imagine doing something so unutterably stupid when you were only halfway through the test.

      Imagine what a complete fuckwit idiot you would feel like. Especially if you were the Project Manager for the office that oversees and administers the system.

      Just imagine how stupid and irritated you’d feel right now. And what a bowel-looseningly cringing and fawning email you would have to send to the Head Instructor begging to be let back in over the weekend so you could finish said test.

    • As an aside

      Thursday, 22 Oct 2009

      There is nothing like a 2hr policy and documentation meeting on HIPAA compliance and the HITECH act to really stifle your creativity for the day.

      Really.

      Anyone want to take my “Clinical Practice and Policies” midterm for me? It’s due by midnight…I can’t face more documentation and bureaucracy right now…

      (is it illegal to go for a beer before sitting an exam? Or just stupid?)

    • Scientific Deathmatch Brewing

      Friday, 16 Oct 2009

      I am a neuroscientist by training and inclination, not an anthropologist, or archeologist. Nor am I geologist, geochemist or any other geo-ist. However, I am inherently curious and skeptical and enjoy watching the discovery channel reading widely and broadly.

      According to published scientific reports, around 13,000 years ago, give or take, an asteroid or comet slammed into the earth over North America, or at least exploded in the atmosphere sufficiently close to land, to cause massive environmental upheaval, leading ultimately to the extinction of the “original” North American human colonists, known as the Clovis People, along with all the mammoths, and giant hairy Hamsterbeasts (You made that one up! Ed.) – known collectively as Megafauna.

      I’ve seen this take on more popular status and watched shows of varying quality on the History Channel and the Discovery Channel, replete with special effects and extras in dodgy make-up pointing fingers at the sky and then being swept aside in extraterrestrial pyroclastic flows (You made that up! Ed.). I remember reading, in the august Proceedings of the National Academy of Science (PNAS to us geeks), a report by the aptly named Firestone et al. in 2007 adding more details of this event including analysis of magnetic spherules, or microscopic grains that are only formed in the terrible heat and pressure of an extraterrstrial impact. This added weight to the reports of the cause of the so called, “Younger Dryas” that killed off our early and adventurous Eurasian ancestors.

      However, a new article, also in PNAS today now casts doubt over all this research, and comes to close to calling it a lot of dodgy of nonsense (You made that up too! Ed.)

      Surovell et al. have returned to the impactor sites and, using the techniques applied in previous papers, have attempted to replicate the earlier findings. Surprisingly they find absolutely no evidence of the Younger Dryas impactor.

      In all seven sites, we found no distinct peak in magnetic grains or microspherules uniquely associated with the YD and therefore find no support for an extraterrestrial cause of the YD event and New World Pleistocene extinctions.

      Now, as I mentioned, I am ex-bench neuroscientist and can only take at face value what i read in the literature outside my area of expertise. However, I was particularly taken by some the authors’ closing remarks about The Scientific method.

      In both the resampled sites and our additional sites, using methods taken from Firestone et al., we failed to reproduce their results…Assuming an ET impact occurred, perhaps the lack of reproducibility indicates that the methods used for recovering the magnetic material are not appropriate for the task at hand…[however] The same methods were used at all sites, and our identifications of the magnetic spherules from Lubbock Lake have been confirmed by…one of the authors of the Firestone et al. article, who was involved in much of the laboratory analysis for that work.

      They continue,

      Replicability is fundamental to the scientific method and hypothesis testing; results that are not reproducible cannot be considered reliable or supportive of a hypothesis. Marlon et al. have examined cores from lakes and bogs for charcoal indicative of “massive burning” associated with a 12.9-ka impact and found no such evidence. We have been unable to find high concentrations of magnetic particles and spherules, considered key impact indicators, at the 12.9-ka level in seven sites that should exhibit this evidence if the impact hypothesis is credible. In short, we find no support for the extraterrestrial impact hypothesis as proposed by Firestone et al. (1).

      BOOYAH Right there…that’s a scientific bitch-slap mate.

      Usually when something like this happens there is a rapid response in the Commentary section of a journal, and the original authors are given the opportunity to address the claims against them/their data. I shall be eagerly awaiting any rebuttal from the original groups that claimed a Younger Dryas impact event.

      And this certainly raises questions, not only obvious ones of why there should be such differences between research groups data on something so fundamental. But it re-opens questions of what did happen to the Clovis people (and other Paleoindian tribes), and what triggered the Younger Dryas and thus the mass extinction of plasticine Pleistocene megafauna?

    • A Boss, today

      Today is National Boss’ Day here in the US. Our Business Manager brought in bagels and cake for our Vice Chancellor and we all signed a nice card for her. Our Associate Vice-Chancellor is conveniently mysteriously “ill” after a late night shopping spree, and my direct boss, the Assistant Vice-Chancellor is off to Chicago and a nice long week of science and shopping on the Magnificent Mile

      So here am I chilling out in my office, listening to some choones, enjoying going through thousands of web pages and changing our domain name on every hard-coded email address (another rant for another day…), when in walks my junior programmer, a very sweet young Indian lad, and wishes me Happy Boss’ Day! Him and my other programmers are off to get Thai food for lunch and they’re gonna bring me back a doggie bag!

      You could have knocked me down with a feather! I’m a boss!

      I’ve been intelligently designed evolved…maybe I need to change the name of my blog finally…

    • Responsible Research

      Thursday, 15 Oct 2009

      I’m live blogging from our first ever Responsible Conduct of Research (RCR) workshop for our Postdoc Fellows. This event was co-sponsored by a grant I wrote to the National Postdoc Association last year. RCR training is mandatory, starting next year, for any postdoc funded by the National Science Foundation. Likely the National Institutes of Health will follow suit in the near future.

      Right now Prof. Ackerman, Chair of our Institutional Review Board, is presenting on the morals of scientific research. This promoted the head of our Postdoc Office to stand up 10mins into the talk and confess that she hadn’t received informed consent from those present to record the session. You couldn’t make this up!

    • Pulling out

      Friday, 09 Oct 2009

      Thanks to DrugMonkey over at ScienceBlogs.com I heard that the Society for Neuroscience is looking for bloggers to cover the annual meeting, being held next week in Chicago, IL. Thinking that I’d be blogging whilst there I applied and gave them this blog as my example. I explained about the “Meandering Scholar” theme and how I would be able to provide perspective from “both side of the bench” (whatever that means). I also highlighted my recent Correspondence to Nature as an example of why I should picked.

      And lo and behold, hither, thither and yon, they picked me!

      Thank you for applying to be an SfN Neuroblogger for Neuroscience 2009. Your blog application was reviewed, and we would like to invite you to be an official Neuroblogger! If you accept, please provide a final blog URL to program@sfn.org for immediate posting.

      As we begin to post final URLs of the accepted bloggers, SfN Interactive will be displayed on www.sfn.org/am2009 page and General Attendees drop-down menu. Announcements will also be made on the main SfN home page, Facebook, and next week’s Neuroscience Nexus. Here are some reminders:

      From Oct 17 to 21, please write at least one blog entry per day about activities, events, and experiences related to Neuroscience 2009.
      Bloggers will be categorized by theme but will not be limited to blogging about just that theme.
      Your blog link will be posted on the Web site until Friday, November 13.

      Also, while you are at the meeting, keep an eye out for novel methods and technology development within your area of neuroscience.

      We look forward to hearing from you!

      Best regards,

      Annual Meeting Program Staff

      continue reading this post
    • On excellent colleagues

      Wednesday, 07 Oct 2009

      I have a half written blog post about my recent absence from the Network, and indeed, blogsphere in general. It ties in nicely with the title of this blog, so I’m actually trying to do it justice instead of usual 15min brian brain dump.

      But, in the meantime, just a note to mention the totally excellent Dr. Tee, my colleague and junior Faculty member in my department. I am trying to finally catch up on my reading after not having looked at The Literature for weeks and weeks. And this is fun, but somewhat mind numbing at times. The sun is shining through my office window, the printer is humming as I print out PDFs and it’s getting hard to focus.

      And at the perfect moment, in strolls the inimitable Dr. Tee with a bag of fresh chocolate-infused coffee beans, and says he is making a pot of coffee and am I interested. Bear in mind, Dr. Tee’s coffee is to regular coffee what Pentaerythritol tetranitrate is to a match head.

      so here I am, freshly infused with liquid amphetamines, blogging about blogging, and about to try and concentrate on the two Genetics Opinion articles in this week’s Nature

    • Happy National Postdoc Appreciation Day

      Thursday, 24 Sep 2009

      Today, September 24th is the National Postdoctoral Association “National Postdoc Appreciation Day”.

      Given the interpretation of “postdoc” used by the NPA I therefore offer a hearty and heart-felt

      Bloody Good Show, keep up the hard work, and treat yourself to your beverage of choice

      To all Postdocs, Research Assistants, Technicians and fresh-faced Junior Faculty.

      Postdocs number in the tens of thousands in the US research system and are arguably responsible for the majority of the research output of the nations Universities and Institutes. They are frequently underpaid (compared to terminal-degree holding compatriots, especially in academia), over-worked and poorly compensated (via healthcare, retirement & other work-related rewards). Furthermore, because of the dearth of Faculty positions and an increasing expectation of high postdoctoral output, many postdocs find themselves in extended periods of service, stretching far beyond the original genesis of the system.

      I’d like to urge everyone who works with postdocs, as well as postdocs themselves, to take a minute and thank the postdocs around you. Students, talk to your postdocs, use them as the valuable resource they are. Faculty, thank your postdocs for their hard work, Administrators, thank your postdocs for providing your institute with the research output necessary to generate the indirect costs that keep our universities working.

      Happy NPA day!


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