Alan Ruttenberg: all publications

• Publications

  • Ruttenberg A, Rees J, Samwald M, Marshall M. Life sciences on the Semantic Web: the Neurocommons and beyond Briefings in Bioinformatics 10 , 193-204 (2009)

  • The SWAN biomedical discourse ontology. Journal of biomedical informatics (2008) (Epub 04 May 2008) PubMed ID:(18583197)

  • Courtot M, Bug W, Gibson F, Lister AL, Malone J, Schober D, Brinkman RR, and Ruttenberg A. The OWL of Biomedical Investigations OWL Experiences and Directions (OWLED) (2008)

  • Stenzhorn H, Srinivas K, Samwald M, Ruttenberg A. Simplifying Access to Large-Scale Health Care and Life Sciences Datasets Lecture Notes in Computer Science 5021 , 864-868 (2008)

  • Pradines J, Dancik V, Ruttenberg A, Farutin V. Connectedness Profiles in Protein Networks for the Analysis of Gene Expression Data Research in Computational Molecular Biology: 10th Annual International Conference, RECOMB (2007)

  • Ruttenberg A, Clark T, Bug W, Samwald M, Bodenreider O, Chen H, Doherty D, Forsberg K, Gao Y, Kashyap V, Kinoshita J, Luciano J, Scott Marshall M, Ogbuji C, Rees J, Stephens S, Wong GT, Elizabeth Wu, Zaccagnini D, Hongsermeier T, Neumann E, Herman I, Cheu. Advancing translational research with the Semantic Web BMC Bioinformatics 8 (2007)

  • Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ, The OBI Consortium, Leontis N, Rocca-Serra P, Ruttenberg A, Sansone S, Scheuermann RH, Shah N, Whetzel PL & Lewis S. The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration Nature Biotechnology 25 , 1251 - 1255 (2007)

  • Edge-count probabilities for the identification of local protein communities and their organization Proteins (2006) PubMed ID:(16372355)

  • What BioPAX communicates and how to extend OWL to help it OWLED-2006 (2006)

  • Ruttenberg A, Rees J, Luciano J. Experience using OWL DL for the exchange of biological pathway information. Proc. of the First OWL Experiences and Directions Workshop 188 (2005)

Results