Events: detail
Special Bioinformatics Seminar: Exceptional Words Counting
- Speaker:
-
Mireille Regnier , Inria-FRANCE
- Starts:
- October 29, 2008 at 11:30 am
- Ends:
- October 29, 2008 at 01:00 pm
- Location:
- MIT, Building 32, Stata Center, G575, TOC Lab, 32 Vassar Street , Cambridge, MA. 02139
- Maps:
Description
We present two recent works to assess the significance of exceptional words, such as Transcription Factor Binding Sites in co-regulated genes. First, one designs AhoPro, a variant of a classical automaton, AhoCorasick. A nice feature is the possible assessment of the significance of a weak signal when exists a strong signal. Space requirement is minimized in a second approach, that relies on a so-called overlapping graph. Some applications to Drosophila regulation are presented.
- Registration required:
- No
- Free:
- Yes
For more information
- Contact person:
- Patrice Macaluso
- Email:
- macaluso [ at ] csail.mit.edu
- Website:
- Special Bioinformatics Seminar: Exceptional Words Counting
