Genetics

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  • Profile

    Open forum to discuss criteria for experimental design and publication. The main aim is to develop community methods for producing and evaluating agreed criteria via tagging, voting and discussion. Topics to be addressed include but are not limited to:
    1) Genetic association studies for common and complex human diseases.
    2) Copy number variation.
    3) QTL analysis.
    4) Mendelian diseases.
    5) Microarray methods.

    Website:
    http://blogs.nature.com/ng/freeassociation/
    Admin contact:
    Myles Axton
  • Notice board

  • Forum

  • Members'
    publications

    • Veerla S, Lindgren D, Kvist A, Frigyesi A, Staaf J, Persson H, Liedberg F, Chebil G, Gudjonsson S, Borg Å, Månsson W, Rovira C, Höglund M. Patterns of microRNA expression in urothelial carcinoma; identification of potential prognostic markers. (2008)

    • Heckmann L, Sibly R, Connon R, Hooper H, Hutchinson T, Maund S, Hill C, Bouetard A, Callaghan A. Systems biology meets stress ecology: Linking molecular and organismal stress responses in Daphnia magna Genome Biol 9 (2) (2008) doi: 10.1186/gb-2008-9-2-r40

    • Heidenblad M, Lindgren D, Jonson T, Liedberg F, Veerla S, Chebil G, Gudjonsson S, Borg A, Månsson W, Höglund M. Tiling resolution array CGH and high density expression profiling of urothelial carcinomas delineate genomic amplicons and candidate target genes specific for advanced tumors. BMC medical genomics 1 , 3 (2008) (Epub 31 Jan 2008) PubMed ID:(18237450)

    • Promoter analysis of epigenetically controlled genes in bladder cancer. (2008) (Epub 14 Jan 2008) PubMed ID:(18196590)

    • Veerla S, Höglund M. Analysis of promoter regions of co-expressed genes identified by microarray analysis. BMC bioinformatics 7 , 384 (Epub 17 Aug 2006) PubMed ID:(16916454 )

    • Frigyesi A, Veerla S, Lindgren D, Höglund M. Independent component analysis reveals new and biologically significant structures in micro array data. BMC bioinformatics 7 , 290 (Epub 08 Jun 2006) PubMed ID:(16762055 )

    • Veerla S. Bioinformatics-based exploration of regulatory regions in human genome LU TP 2 , 03-22 (2003)

    • HEDENFALK I, GLARNER N, KRONBLAD A, VEERLA S, RINGNΕR M, LANDBERG G. Microarray-based Analyses of Hypoxia-induced Transcriptional Changes in Breast Cancer Cell Lines. CANCER GENOMICS & PROTEOMICS 2 , 83-96 (2005)

    • Heidenblad M, Schoenmakers E, Jonson T, Gorunova L, Veltman J, van Kessel A, Höglund M. Genome-wide array-based comparative genomic hybridization reveals multiple amplification targets and novel homozygous deletions in pancreatic carcinoma cell lines. Cancer research 64 (9) , 3052-9 PubMed ID:(15126341 )

    • Ringnér M, Veerla S, Andersson S, Staaf J, Häkkinen J. ACID: a database for microarray clone information. Bioinformatics (Oxford, England) 20 (14) , 2305-6 (Epub 12 Feb 2004) PubMed ID:(14962935)

    • Moulton JD. Using Morpholinos to Control Gene Expression Current Protocols in Nucleic Acid Chemistry Unit 4.30 (2007)

    Group members can post their publications here from their profile page.

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