• Mind the Gap

    Adventures in the London sci-lit-art scene...and occasionally beyond

    • In which I feel the womanly force

      Wednesday, 07 May 2008

      Back in the days when my hair was longer, my blood hotter and my T-shirts, more tie-dyed, I used to be a rampant feminist. I earned my undergraduate degree at Oberlin College, which my fellow Americans will recognize as one of the most liberal of the liberal arts colleges. Founded in 1833, Oberlin was the first American university to allow in black students (1835), female students (1837) and, more scandalously, the cohabitation of male and female students in the same hall of residence (1969). My four years there earning a BA in Biology seem like a haze of protests, marches and carefree gigs as one of the three barefoot tenor pan players in the Oberlin College steel drum band. Despite this, the academic regimen was fierce: alongside the rigorous science classes, I was also exposed to elective coursework as diverse as Ancient Greek, anthropology, Hispanic poetry, ethnomusicology and Ultimate Frisbee.

      Hippie days Spot the blogger in this impromptu gig underneath Mudd Library, circa 1989

      I should clarify that I am still a feminist, if you define feminism as the desire to see women enjoy the same opportunities and rewards as men for expending the same amount of effort. I adore men too much to be in the man-hating, bra-burning category, and neither am I a person who deludes herself that women and men are not different. Instead, my feminism these days is lumped into a larger ethos, that of loathing injustice in whatever guise it might take; for example, the thought of earning less pay for doing the same job quite understandably irritates.

      Today I had the pleasure of enjoying my first female power lunch since joining the ranks of staff at University College London. Organized by the indefatigable Uta Frith, a well-known developmental psychologist and Fellow of the Royal Society, these lunches take place six times a year at the RS and offer an opportunity for so-called ‘high-flying’ female academics in the sciences to network – so I was thrilled to finally get the nod.

      What transpired? We discussed a recent Current Biology article that Professor Frith had sent around for us to read beforehand, a thoughtful and balanced meditation on a female life in science by the Nobel-winning developmental biologist Christiane Nüsslein-Volhard. There was a lot of musing about why many at the table were earning less than their male colleagues, how UCL could get away with allowing a particular science committee to be held at an all-male private club, and what could be done to set up less formal and more frequent female get-togethers. All in all, thoroughly enjoyable.

      Still, I must confess that I have always wanted to be a fly on the wall at an old fashioned, God-fearin’ old-boys-club networking session. In my mind’s eye, men are so sorted that they don’t have to talk about their situation. They are, I imagine, free to socialize and chat about sport or politics or whatever else takes their fancy. Women, on the other hand, get the opportunity so infrequently that they can’t afford to be anything other than meta about what they are trying to achieve by coming together. So I suppose that we’ll know we’ve arrived when the lunchtime topics are free to roam far beyond the constraints of gender.

    • In which I deconstruct the publication process

      Wednesday, 30 Apr 2008

      Everyone seems to be writing papers at the moment. The other day in the office, two of my labmates were sitting at a computer, thrashing through the proto-Results section of their jointly first-authored magnum opus. In such close quarters, the rest of us were unable to avoid being included in the audible brainstorming process.

      I started thinking, then, how many stock phrases occur in manuscripts. Why is it, for example, that adverbs like ‘interestingly’ seem always to be deployed for the most boring results? When I voiced this rhetorical question aloud, we decided to stage an impromptu competition for more original adverbs.

      “Earth-shatteringly, there was no significant difference,” someone proposed, getting into the spirit. Other top picks included ‘astonishingly’, ‘tantalizingly’, ‘mind-bogglingly’, and – a personal favorite – ‘Lo and behold’.

      My own lab’s papers are not the only ones I’m helping out with, however. Over the past few months, word has spread throughout the institute that I used to be a journal editor. Now, I find that I have become an agony aunt of sorts. Hardly a day passes without someone making that pilgrimage up to the third floor, sheaf of papers in hand, to seek out my Delphic advice on various points of manuscript etiquette:

      Does this cover letter sound too aggressive/wimpy/cocky/demure/over-confident/smarmy/fatalistic?

      I realize they’ve rejected my paper outright. But if you read between the lines, do you think they might secretly want it back?

      How can I imply that referee 2 is an imbecile without sounding defensive/insecure/unbalanced/violent/vindictive/petty?

      Which of these experiments does the editor really want me to do, and which are just window-dressing?

      Do you think I can buy four more weeks for this revision effort if I tell the editor that the first author is on maternity leave?

      It’s only since I’ve been back in the lab that I’ve realized how much the publication process is like an elaborate mating game. With its rituals and codes, artifices and conventions, it is ultimately a relationship in which the authorial side was never meant to truly commune with the editorial. For me, understanding and empathizing with both sides is both a blessing and a curse. When it comes time to write up my own paper in a few months’ time, I can’t decide whether I’ll feel more like a schizophrenic or a double agent.

    • The history of our fair profession is riddled with stories. First and foremost are the journal articles themselves, which seek – in their own characteristically arid way – to describe an incremental advance and thereby place it into the context of wider knowledge. But these are not, in many ways, the truest or most interesting stories that science has to tell. Behind every journal article is a drama enacted by a cast of characters on a high-pressure international stage. And for every sentence that makes it into a paper, there must be thousands for which there is no room. Inevitably shunted to the background are the narrative details that would bring these discoveries to life, breath color and meaning and passion into the collective human acts that resulted in each official snapshot of hard-won knowledge. That such papers do not – or cannot – flesh out the narrative has been a cause for chagrin as much as humor with some of my LabLit authors.

      Rapt: Even the PRS likes a good story

      When you strip away the formal scientific record, all that is left are the stories of the people who were part of creating it. Of course some scientists write autobiographies, but our collective library of scientific tales is primarily a verbal one: pub stories, rumors, speculations, fading memories, back-stabbing mutterings, second-hand accounts and urban myth. We know that even first-hand retrospective accounting is bound to be flawed and incomplete, warped by the perspective. Like snowflakes or Henry Gee’s anecdotes, no two are likely to be alike. And as scientists age, especially those who have made pivotal discoveries, we risk losing their crucial stories. This is why projects such as The People’s Archive, and others like it, are so important.

      Last night I enjoyed the privilege of dining at the Royal Society with a small group of scientists who’d been invited to celebrate a public lecture given just before by Eric Kandel, professor at Columbia University and recipient of the Nobel Prize for Medicine in 2000. I was already primed to think about scientific memory thanks to the contents of Kandel’s excellent talk: an account of the neural systems and molecular mechanisms that contribute to learning and long-term storage. After the desserts were cleared away, Kandel tapped on his glass, uncharacteristically serious, and began to reminisce about the story behind the key discovery typically attributed to him. Was it this way, he asked; or was it that? Did this post-doc or graduate student make a key finding that pushed the momentum in the right direction? Did that colleague give up too soon, paving the way for someone else to take up the slack? One by one, the other men around the table who had been involved in the narrative began to offer their own accounts: Tim Bliss, John O’Keefe, Richard Morris, tossing the ball back and forth and seeing where it led.

      I’m not sure if anything conclusive was decided in this spontaneous reexamination of reality, but it was a magical moment for me, and for the rest of the table too, to judge by our hushed attention – unexpected witnesses to a reassessment of history.

      At one point I leaned over to Martin Rees, on my right, and whispered that it was a shame nobody had brought along a tape recorder. He nodded solemnly, then whispered back that it was a good thing I was taking notes.

      I look at these now, and they are nothing: just a few random scrawls, dead on the page. The real story has been imported into my short-term memory, firing up second messengers and action potentials somewhere deep in my hypothalamus. But it will never be the same as the living, breathing moment that has already passed.

    • In which I rhapsodize over my instruments

      Sunday, 13 Apr 2008

      If you are not an absolute geek, look away now.

      As for the rest, have any of you ever visited the Royal Museum of Scotland in Edinburgh? I first had the pleasure one summer long ago when I ran away from home on an ultimately ill-fated romantic mission, but ended up falling in love with their superlative Science and Industry collection instead. Since then, I’ve been back several times. You wander the hushed shadowy halls peering at the objects behind the glass and feel humbled by the weight and beauty of the history of science crowding just over your shoulder: astrolabes, sextants, microscopes, difference engines, compasses, telescopes; everything chrome and brass, copper and bronze, gold and steel, knurled and sculpted and buffed like an artefact out of a Philip Pullman novel.

      Swanky kit: Goes from zero to sixty in ten seconds

      They don’t, I’m afraid, make them like they used to. I was thinking about this the other day when I had to do a bit of microbiology, the first since resuming my career as a bench scientist. I wanted to inoculate some bacteria into broth, so asked around the lab to see who could lend me a platinum loop. No joy. So I trekked, then, around the institute, asking people at random: I either got baffled looks, or people saying, “Well, I always just use a yellow Gilson tip”.

      A yellow Gilson tip? This is what happens when you earn your PhD in an old-fashioned, God-fearin’ American Microbiology department: you become really fussy about your instruments. (You also feel reluctant to drink from anyone else’s glass for the duration of your thesis, but that’s another story.) I don’t feel I am doing justice to sterile technique with disposable plastic: once the box has been opened, the masses of amp-resistant bacteria swirling around our lab are bound to encroach. Besides, there is satisfaction and ritual in the dousing of the wire into the alcohol, the purifying flame of the gas burner, the sizzle of the molten loop in the cool agar or broth. I was never one of these cavalier plate scribblers, either: no, my streak-outs would be conducted in the strict three-area method with colonies isolated to perfection.

      Dear Reader, I purchased that platinum loop and holder. A really swanky, expensive one from Fisher Scientific, with a wonderful heft and weight to it, and a wire that sizzled like a fine sports car.

      It felt wonderful.

    • I’m afraid to say it out loud, but my lab notebook just isn’t up to the job anymore. Last time I talked about how difficult it is to display some forms of modern experimental data in a readily comprehensible fashion. But that’s not the only problem I’m having these days. Documenting my work in the trusty notebook is also growing more futile: most of my data consists of monster spreadsheets and terabytes of images and videos. I know journals have overcome this problem by exploiting online publication and supplementary data, and labs, by creating vast storage databases on their websites. But gone, for me, at the personal level, is the ability to record everything that I am doing with a pen, on paper.

      This state of affairs is particularly distressing for someone of my temperament. In an older post, I explained how I am a compulsive documenter when it comes to my experiments: no piece of film, for example, is blank enough to escape my scissors and tape; no failed PCR gel is too smeary and inconclusive. I like, in short, to record every detail from triumphant eureka to notorious bellyflop, including scribbles, images, graphs and charts, snippets of email printouts from collaborators – more like a geeky scrapbook than the sort of documents a patent judge might want to subpoena.

      Now, my attempts at summary grow increasingly half-hearted – most of my book is just an index, pointing to a series of files on DVD and a growing family of external hard-drives. Given the fragmented nature of the narrative, even I have problems following the logic of my activities some days. Worse, I don’t really trust DVDs and hard-drives; I’ve had enough of these spontaneously corrupt to know that I can’t rely on their permanence.

      But then, it was ever thus: the ways and means of science have been briskly evolving since I entered the research game back in the late 1980s. My year in graduate school was the last group of students to paste photographs directly into their Ph.D. theses; flipping through it now, I marvel as the pages fan by, weighed down by Kodak paper and glue. I recall, too, the stab of jealousy I felt when the next year’s crop of students showed off their magna opera, all images neatly scanned and incorporated into the document. I’ve seen the conversion from slides to PowerPoint, and the PowerPoint fads come and go: yellow text on a fading gradient of dark blue; cheesy animation transitions; that entire grim year when Comic Sans was the only font you ever saw at American conferences.

      Things change, and I’m going to have to learn to live with my stripped down, new-age lab journal. But I do confess, I won’t be able to love it quite as much as before.

    • In which I utterly fail to conceptualize

      Wednesday, 26 Mar 2008

      The ways and means of science are changing. It’s true: I can feel the tide tugging at me. I’m that waterlogged bit of dead tree mired in beach shingle; the last few passes of the surf have caused me to start sliding in. As the tide continues to turn, I will soon be flowing out into the grey deeps, liberated from gravity and on my way – whether I want to be or not.

      Too much information: Scientific datasets no longer color between the lines

      What triggered this idea today was Excel spreadsheets. Like them or loathe them, it’s not really possible to analyze a genome-wide screen without a large number of them. In the past I have got round my antipathy towards the output of this hateful Microsoft product by printing the damn things out at the first opportunity, impaling them spitefully with holes and filing them in a tidy binder with colourful tabs. Soon, the printed spreadsheet would acquire scribbles, notes, a rainbow’s worth of highlighter pen marks. Thumbed through until the corners were ragged, stained with coffee, I would know exactly where my experiments were and what I had to do next. I might feel the need to update or correct the electronic version, but it was never the working copy.

      All well and good, but what to do when your spreadsheet has thousands of rows and more than fifty columns? No amount of column narrowing and font reduction can force one of these babies onto a piece of A4. Print it out and your machine will spew out a monster collage that would need to be pieced together like the Dead Sea Scrolls (along with about a hundred superfluous blank pages for good measure). But try as I might, I cannot seem to think when facing a small computer screen with multiple windows of information that I need to compare. Click one open and the other is immediately forgotten; click back and you forget why you left in the first place.

      But there is hope: I liken this difficulty to the mental shift I had to make, in the 1980’s, when we all had to start composing words with a keyboard instead of a pen. Remember that, those of you of a certain age? I have a distinct recollection of sitting at a shiny Canon electric typewriter in my university dorm room, trying to force my creative juices to flow without a pen between my fingers. I felt disarmed, almost crippled. The typing movements of my fingers could not seem to stimulate the same neuronal pathways. Now, of course, my handwritten journals are what is rough and artless – only with a keyboard can I produce quality material. My brain, it seems, has adopted. And I have no doubt that the next generation will be able to perform these mental acrobatics, to think in virtual space, as naturally as breathing.

      In the meantime, you’ll have to excuse me: I have a tide to catch.

    • It may be below zero on these chill London evenings, but spring is in the air. And so is science-related fiction. On Monday, I was a talking head on the Guardian’s ‘Science Weekly’ podcast, which was devoted to science and literature. What’s more, the formal announcement is forthcoming, but I’ve been authorized by fellow Nature Network London denizen Jonathan ‘he’s a lot less green than his avatar’ Black to leak a little trailer about an exciting new monthly manifestation: The Fiction Lab.

      Exciting revelations: The new-look RI should be completed by April’s end

      The Fiction Lab, coming soon to the state-of-the art bar in the newly refurbished Royal Institution on Albemarle Street, will be a reading group dedicated to lab lit and other science-related or inspired literary fiction. Brought to you by the RI and presided over by yours truly, it may in fact be the world’s first science-in-fiction salon. Once a month, starting on 9 June, we will gather together to enjoy a drink and discuss a great novel that features science at its heart. Sadly, there isn’t enough new pure lab lit fiction—novels featuring scientists plying their trade as central characters—to sustain a monthly book group, but despair not: we’ll be supplementing this rarefied genre with novels that are generally inspired by science or scientific ideas. Each month’s selection will be chosen by the group, and you’ll have a month to read the book before we convene to give it a poke and a prod.

      Our first book will be The Sun and Moon Corrupted by Nature’s own Philip Ball. Ball is a prolific author of popular science non-fiction, but this is his debut novel, out in May and available now for pre-order on Amazon. It is puffed thusly: A young journalist, Lena Romanowicz, goes in search of Karl Neder, a provocative physicist whose discovery of a new energy source made him an outcast. In order to find him she must follow his trail from the castles of Transylvania to the rocket labs of NASA, from Viennese cafés to the blasted borderlands of the Soviet Union. But as Lena chases his story across the world, she is also trying to outrun the buried motives that drive her. Tantalizing stuff.

      As a special treat, the first Fiction Lab will feature a special appearance by Philip Ball himself, who (after we’ve have a chance to thoroughly decimate his magnum opus – just kidding, Phil) will rather bravely drop by at the end to share his insider insights with the group.

      We’ll keep you posted on any further developments!

    • In which I smile for the cameras

      Sunday, 16 Mar 2008

      Like many scientists, I often gnash my teeth at the way our profession is portrayed in science documentaries. Yet at the same time, I have always suspected that it is not as easy as it looks. So it was with genuine curiosity that I accepted a consultancy to help out with Science on Film, a joint project between the Wellcome Trust and the Documentary Filmmakers Group. Science on Film brings together eight practicing scientists with eight young filmmakers, who in pairs are coached through the entire process of creating a short science documentary from initial idea to gala launch screening. The ultimate goal is to teach the participants more about what goes into making a skilled science documentary: the filmmakers will hopefully learn more about how best to portray a complex scientific topic in a fair, balanced, understandable and entertaining way, while the scientists will ideally come away with a better idea of how difficult this balancing act can be.

      The course, still ongoing, spans three long weekends and teaches narrative, story research, interview skills, camera work, editing and other technical aspects. And I’ve run a few workshops with them about what science is really like: the processes, the lifestyle, the culture, the history, the myths and realities, the stereotypes – in short, the good, the bad and the ugly. In parallel, listening to the filmmakers’ point of view has been eye-opening. Aspects about science filmmaking that I despise – for example, the tired old narrative formula that BBC Horizon used to employ on every one of its films – were held up by the film tutor as shining examples to be emulated. Yet in listening to the justifications for these points of view, without being entirely converted I at least came away with something to think about.

      This past Friday, they all came to my lab to practice filming scientists in their natural habitat. Have you ever tried to fit in eight cameras and affiliated paraphernalia, sixteen filmmakers, one tutor and two assistants into a lab containing only four bays? Come to think of it, have you ever had to pin down eight scientists and make them stay in the same place for more than ten minutes? The filmmaker mob descended just after lunchtime, lugging their cameras, wielding furry-tipped booms and looking around expectantly. The head tutor turned visibly pale when he saw that not a single one of my colleagues was yet in evidence. As tumbleweeds blew through the empty room, I attempted to round up my labmates by mobile phone: tutorials had run over; a train was delayed; a confocal experiment was playing up; our Italian undergradute really just wanted to finish her lunch in a leisurely fashion. I even had to commandeer a reluctant technician from the lab next door to make up the numbers.

      But eventually we’d all settled down, each filmmaker pair interviewing and filming its designated scientist. I had had no idea how my colleagues would react to this strange invasion into their precious time, but soon was able to breathe a sigh of relief: real chemistry seemed to be developing and everyone was getting on splendidly. I did overhear a few altercations (“What do you mean, you don’t understand the words ‘apoptosis’ and ‘epithelia’?” the Chinese student demanded. “How else can I explain my project?”) and watched with amusement as one of the crews persuaded a post-doc who works exclusively with cell culture to hold a vial of fruit flies and squint at them down the microscope.

      But now I know, at least in part, how some of those irritating scientist cliché memes get transmitted in science documentaries. When there is a camera in front of you begging for something televisual to happen, you can’t really help acting out the part. So it was that I found myself possessed by the Spirit of Channel 4, holding an Eppendorf tube up to the light and sagely inspecting it as I flicked its contents in agonizing slow motion, just as I’ve seen in thousands of canned shots before.

      We all know how we’re supposed to act, and remarkably, this is exactly how it unfolds. How many other stereotypes are out of our conscious control?

    • In which I marvel at bureaucratic insanity

      Monday, 10 Mar 2008

      It was only a matter of time before the British government cottoned on to the fact that we cavalier biological researchers were regularly engaged in perilous international ‘veterinary trafficking’ activities. Yes, you. Put down that rabbit antibody and step away from the bench, nice and slow like.

      I always knew our days were numbered: what a luxury, to send and receive that simple Jiffy-padded envelope full of vials of living fruit flies or nematodes, antibodies or plasmids or cell lines, dispatched from far-flung labs with nothing more complicated than the standard marker-pen scribbled mantra: ‘biological samples, non-hazardous’. Such was the collegial nature of such transactions that it would have been a breach of etiquette for the sender to even hint at the possibility of postal recompense, although I once liberated a vial with a cheerful note twisted around it that said “Buy me a beer the next time you see me at Keystone”. To share materials without complication; to desire and request a strain and to have it show up a few days later, no muss or fuss – such opulence. I always knew, in short, that we were somehow operating under the wire, and that if the powers-that-be ever suspected, we’d be in big trouble.

      Well, our halcyon days are now officially over, at least in Blighty. Importing scientific reagents into the UK just became a lot more complicated. The laws were passed more than a year ago, but it seems they only decided to start enforcing them very recently. Our lab noticed the winds of change last week when a purified antibody, dispatched by Fedex from the States, failed to arrive on schedule. A few days later, we received an ominous missive from DEFRA (The Department for Environment, Food and Rural Affairs), an extract of which I reproduce below for your entertainment and edification:

      “The import requirements for this type of import are set out in Importer Information Note (IIN) BAL-Live 1…This states that these animals may be imported with a declaration from the exporter stating that at the time of dispatch the animals showed no obvious signs of disease and that the holding of origin was no subject to any restrictions for reasons of Animal Health. If these animals are being imported from a Third (non-EU) Country it is necessary for it to enter the UK through a Border Inspection Post (BIP). For a list of BIPs and their capabilities please follow the link below. You must give 24 hours prior notification by a Common Veterinary Entry Document (CVED) which can be obtained from your local Animal Health Divisional Office (AHDO) or BIP. Part 1 must be completed and returned to the BIP of entry into the EU. To find your local AHDO please follow the link below. Products included in this requirement include blood products, serum and antibodies. … Once received the original copy of the documentation should be attached to the consignment prior to export so that it arrives with the correct documentation at the BIP. Failures to do so may result in delays to the processing of your consignment and to the eventual re-export or destruction of the consignment.”

      (Anyone out there know how to spot a diseased antibody? Tiny sneezes issuing from inside the Eppendorf tube, perchance?)

      In parallel, emails started to circulate amongst collaborators and colleagues, tales of lost packages, of delayed frozen materials that had arrived several days after the last of the dry ice had evaporated, of crucial manuscript revisions delayed because an irreplaceable reagent had gone astray, of epic telephone arguments with implacable officials at Stansted Airport (our nearest ‘BIP’, since you ask). People justifiably wondered why no one from DEFRA had bothered to alert any of the major universities and research institutions that the laws had been changed. Darker mutterings were heard too, conspiracy theories that had DEFRA infiltrated by Intelligent Designists or Christian Scientists.

      All of this, I must say, was sounding a bit familiar to me after a four-year stint in a lab in the Netherlands. There, I tried three times to order COS1 cells from the American Type Culture Collection. Each time, my consignment was intercepted at Schiphol Airport for seven days as the vials were duly inspected by the official in charge of preventing the illegal trafficking of endangered species. COS1 cells, you see, were originally derived from an African green monkey, which is on the official endangered species list. Never mind that the cells in question were derived many moons ago, and that in importing an immortalized cell line, I was actually helping to perpetuate, not imperil, the species’ genomic existence. But to no avail: the checking procedure took exactly seven days, regardless of the logic of my arguments, and no amount of dry ice could withstand that amount of time.

      So heads up, everyone: before you request that crucial perishable reagent from a mate on the other side of the world, gird your loins, obtain and fill our your CVED from your AHDO or BIP, post it to the sender…and ask them to put it in a box the size of a house with enough dry ice to sweat out the inevitable bureaucratic delays. Because, as the DEFRA notice helpfully pointed out, “Please note that the BIP office is not staffed on a daily basis.”

    • In which I'll get all meta on your bad selves

      Wednesday, 27 Feb 2008

      I’d like to personally invite everyone living in or near London to our much-awaited free RI/Nature Network blogging event tomorrow night, already bigged up by our esteemed Editor but worth another mention. I’m already feeling seriously outclassed at the prospect of being on the same panel as Ed “He Writes Like A Veritable Angel” Yong and Ben “His Pseudoscience-Bashing Fury is Terrible To Behold” Goldacre, but very much looking forward to swapping ideas with a friendly audience, hopefully with a minimum of rotten veg propulsion and sceptical, House of Commons-style jeers and guffaws.

      Anyway, we’d love to see you down at the Apple “It’s Really Quite Scarily White” Store on Regent’s Street from 7 PM tomorrow, and for a drink afterwards.


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